Estimation of the Strength of Mate Preference

See the R package matepref to implement the analysis described in Clancey et al. (2021) to estimate the strength and offset of mate preference from empirical measurements of phenotypes in mated pairs.

Population Genomic Analysis for RAD sequencing

Stacks is produced and maintained by Julian Catchen at the University of Illinois, with occasional contributions from our group. Most of the algorithms and analysis in code that was previously posted here have been incorporated into Stacks, in a much more user-friendly and well-documented form.

DimSI: Dimensionality of Sexual Isolation

binomial and Poisson models

Files for download:

User Manual (pdf file -- read this first! Updated 8/16/2012)

Data files (zipped folder of datafiles for all 9 datasets analyzed in Hohenlohe & Arnold 2010)

Timema data (zipped folder of datafiles for stick insects, analyzed in Nosil & Hohenlohe 2012. Note the different format here from that shown in Appendix 1 of the paper! The latter format is traditionally used for calculation of pairwise isolation indices.)

Source code (zipped folder (C code; separate files for binomial and Poisson models plus a header file required for both; updated 8/16/2012) See the Hohenlohe & Arnold (2010) and Nosil & Hohenlohe (2012))

See the Hohenlohe & Arnold (2010) and Nosil & Hohenlohe (2012) publications here.

This work was supported by National Science Foundation grant IOS-0843392.

MIPoD: Microevolutionary Inference from Patterns of

Divergence

MIPoD 1.0 Neutral Module

Files for download:

User Manual (pdf file -- read this first!)

Sample data file(text file with sample data set for Thamnophis taxa)

Source code: main file and header file

See Hohenlohe & Arnold (2008) publication here.

This work was supported by NIH NRSA Ruth L. Kirschstein award 5F32GM076995.

Please email me with any comments, problems, or feedback.

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